A website security audit usually consists of two steps. Most of the time, the first step usually is to launch an automated scan. Afterwards, depending on the results and the website’s complexity, a manual penetration test follows. To properly complete both the automated and manual audits, a number of tools are available, to simplify the process and make it efficient from the business point of view. Automated tools help the user making sure the whole website is properly crawled, and that no input or parameter is left unchecked. Automated web vulnerability scanners also help in finding a high percentage of the technical vulnerabilities, and give you a very good overview of the website’s structure, and security status. Thanks to automated scanners, you can have a better overview and understanding of the target website, which eases the manual penetration process.
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source:http://linuxpoison.blogspot.com/2010/12/135781677519201.html