tutorial - Tuning MySQL Performance With MySQLTuner

You should carefully read the output, especially the recommendations at the end. It shows exactly which variables you should adjust in the [mysqld] section of your my.cnf (on Debian and Ubuntu the full path is /etc/mysql/my.cnf). Whenever you change your my.cnf, make sure that you restart MySQL. You can then run MySQLTuner again to see if it has further recommendations to improve the MySQL performance. This way, you can optimize MySQL step by step

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source:http://linuxpoison.blogspot.com/2008/09/135781757113880.html